PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s673261g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 555aa    MW: 62503.1 Da    PI: 5.1555
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s673261g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP862.9e-27293358171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++ll+++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  PDK_30s673261g001 293 RYDSSLGLLTKKFINLLKHAQDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 358
                        6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.8E-29291360IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-34293358IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.8E-17293356IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.2E-24295358IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.68E-48369475No hitNo description
SuperFamilySSF1440747.85E-35370475No hitNo description
PfamPF164213.2E-33374473IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MTGGRALGNR SAQQQAGQIF QPLKRHLPFP SVRPPFVAPD EYHRALDFYF RIAETSGSRT  60
RHWGSSSSEE EEDEEERDEG KVPADPTEQE EKPRDPIVSE KPLKITRLPK GLTKPLAKLE  120
VSVVEQLKTF YVPPSQAGKR GTLFYRSTQQ PLWREEMEDP AEYIFERVKI PRYYSPKMKE  180
LLERSGYDLS NRSSLPRVAQ SLATVHQLAG CRAFLKRKPD QEDNEAAESS EWTTSPGYAE  240
AVTSPLLTPV SGKGGRTYGR SKAAKNSKSG PQTPMSNACS PSGNPLTPVG TCRYDSSLGL  300
LTKKFINLLK HAQDGILDLN KAAETLEVQK RRIYDITNVL EGIGLIEKKL KNRIRWKGVD  360
DLRPGELDDD VSNLQAEVEN LSLQERSLDE RISEMRERLR ELTEDENNQK WLYVTEDDIK  420
GVPCFQNETL IAIKAPHGTT LEVPDPDEAG EYPHRRYRIV LRSTMGPIDV YLVSQFEEKF  480
EEMSGVETPP RIPPTSHSAF VENSTVEVVT EESRGKEMAP NVQDNQRMSS DPNASQDFVG  540
GMMKIVPSDV DPVNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-25288359174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4131570.0HQ413157.1 Cocos nucifera E2F protein (E2F2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008799682.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor E2FB-like
SwissprotQ9FV711e-124E2FB_ARATH; Transcription factor E2FB
TrEMBLF5A6660.0F5A666_COCNU; E2F protein
STRINGGSMUA_Achr2P20420_0011e-179(Musa acuminata)
STRINGGSMUA_Achr6P07100_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-121E2F transcription factor 1